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NGS DATA ANALYSIS

NGS data analysis, or Next-Generation Sequencing data analysis, is a process of interpreting and extracting meaningful information from the massive amount of data generated by modern DNA sequencing technologies.

These technologies, collectively referred to as Next-Generation Sequencing (NGS) or high-throughput sequencing, allow scientists to rapidly and cost-effectively sequence DNA and RNA molecules. NGS has revolutionized various fields of biology, including genomics, transcriptomics, epigenomics, and metagenomics.

We offer top-notch analysis data from Next Generation sequencing at a reasonable cost.

In A Rush? We offer expedited turnaround times by using a cloud computing solution that can be scaled for a small increase in cost.

Need Validation of Our Results? We have validated our analysis with published data - the results are available upon request.

Have Custom Analysis Needs?
Please contact us with any questions. We will be happy to find a solution that fits your needs!

SERVICES

RNA-SEQ DATA ANALYSIS

Steps:

  • Quality Control
  • Trimming
  • Alignment
  • Alignment Quality Control
  • Quantification

Deliverables:

  • HTML Quality Control output
  • HTML Quality Control output after trimming
  • Sorted BAM files and indexes
  • Raw read counts matrices (TSV file, python pickle)
  • TPM matrices (TSV file, python pickle)
  • Complete pipeline in Jupyter notebooks and Dockerfile for building Docker image

Cost:

$ 60.00 per sample (less than 100 samples). Volume discounts are available.

CHIP-SEQ AND ATAC-SEQ

Steps:

  • Quality Control
  • Trimming
  • Alignment
  • Alignment Quality Control
  • Peak calling

Deliverables:

  • HTML Quality Control output
  • HTML Quality Control output after trimming
  • Sorted BAM files and indexes
  • BDG and TDF files per sample
  • Complete pipeline in Jupyter notebooks and Dockerfile for building Docker image

Cost:

$ 75.00 per sample (less than 100 samples). Volume discounts are available.

DNA METHYLATION

Data Formats:

  • Illumina Infinium MethylationEPIC
  • Illumina Infinium HumanMethylation450K

Steps:

  • Raw data processing
  • Beta values extracting
  • Deliverables
  • Beta values (TSV files, python pickle)

Cost:

$ 60.00 per sample (less than 100 samples). Volume discounts are available.